When the farmer is seen with what appears to be a barbecue grill, they become afraid that the farmer plans to eat the animals, so they escape the farm on a hot air balloon. They ended up landing in a golf course and mistaken it as their new paradise.

Otis and Pip pretend to be superheroes Cowman and Ratboy, but the other animals are not fond of their antics. Fortunately, when Otis and Pip rescue the Pizza Guys from falling off a cliff, the animals decide to join them as superheroes.

After Otis saves Duke's life by pushing him away from a falling amplifier, Duke begins getting loyal to Otis and becomes devoted to helping Otis doing everything, but Otis soon becomes annoyed when Duke goes overboard.

When Pig's truffle pies become a huge hit in the barnyard, the animals decide to use Pig's pies to sell them to the humans to make money, but Pig quits when the animals begin to get greedy with trying to make money, especially when a celebrity comes to buy the pie recipe from them.

A space test monkey named Bingo crash-lands in the barnyard. The animals decide to let him stay in the barnyard, but Bingo is unsatisfied with the fact that Otis is the leader, so he tries to get rid of Otis so he can become leader.

Otis' pranks and Abby's driving lesson has Mrs. Beady sent to a mental institution. Feeling guilty, the animals try to rescue her, much to their dismay: Mrs. Beady's doctor wants to put her on a brain transplant when he thinks Mrs. Beady has "crazy brain" because she sees the animals out the window.

The animals are unable to have Saturday night parties because of the farmer constantly weeping about his lost wife. Otis finds him the perfect girlfriend to make him feel better, but they then realize that she is trying to get rid of the farm animals by kicking them out of the barn and take it over (forcing the animals to stay in the hen house which explodes because of the max capacity of the animals in there). So they dress Pig as rich man to lure the woman away from the barnyard, but Pig wouldn't lie and he confessed to her, which makes the woman leave the farmer. In the end, the animals get to have their Saturday night parties, Pig is heartbroken (which he stops after a few minutes), and the farmer went on a cruise with some ladies.

When Otis gets a hypnosis kit, he accidentally hypnotizes himself so that he tries to destroy the farmer whenever he hears the sound of a bell. Now, the other animals must try to protect the farmer while trying to cure Otis at the same time. But every time Abby tries to stop Otis from hurting the farmer, he thinks she is hurting him.

With Peck nowhere to be seen and Freddy seen lying on Peck's feathers, the animals conclude that Freddy ate Peck and plan to ban Freddy from the barnyard (Duke locks Freddy in a 'scented' pet carrier to attract the pet store truck driver so Freddy would be adopted). Otis is determined to prove that Freddy is innocent, however.